Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3943

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12310 and 12311 are separated by 134 nucleotides12311 and 12312 are separated by 441 nucleotides mRNA_3942: 12310 - K20298 VPS52 vacuolar protein sorting-associated protein 52, at 954,085 to 956,912 12310 mRNA_3943: 12311 - K10843 ERCC3, XPB DNA excision repair protein ERCC-3, at 957,047 to 960,564 12311 mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961,006 to 963,369 12312

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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956,209 - 12310 mRNA_3942 0.75 +0.7
956,652 - +1.4
956,657 + +0.3
956,950 - -0.1
956,952 + -3.0
956,958 + +0.6
956,968 - -1.0
960,342 - +2.4
960,628 - -0.2
960,647 - +0.1
960,648 + -0.1
960,649 + +0.8
960,795 - +0.1
960,946 - -0.9
961,141 + -0.6
961,175 - +0.6

Or see this region's nucleotide sequence