Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4641

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13008 and 13009 are separated by 393 nucleotides mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666,733 to 668,799 13008 mRNA_4641: 13009 - KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain, at 669,193 to 672,697 13009

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
668,314 + 13008 mRNA_4640 0.76 -1.5
668,398 - 13008 mRNA_4640 0.81 +0.9
668,592 + 13008 mRNA_4640 0.90 +1.2
668,746 - -0.2
668,747 - -1.4
668,878 + +0.5
668,898 - -0.1
669,789 + 13009 mRNA_4641 0.17 -0.8
670,057 + 13009 mRNA_4641 0.25 -2.4
670,183 - 13009 mRNA_4641 0.28 +0.6
672,268 + 13009 mRNA_4641 0.88 -3.7
672,701 - +0.2
672,717 - -0.3
672,822 - +0.7
672,827 - +0.5
672,827 - +0.3
672,827 - +0.0
672,831 - +0.1
672,836 + -0.1
672,839 - +0.5
672,858 - -0.3
672,860 + +0.4
672,860 + +0.7
672,864 - -0.6
672,873 - -0.1
672,899 + +0.4
673,014 + -0.7
673,025 + +0.1
673,038 + -0.5
673,139 - +0.2
673,399 - -1.0
673,457 + -0.4

Or see this region's nucleotide sequence