Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4650

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13017 and 13018 are separated by 273 nucleotides13018 and 13019 are separated by 439 nucleotides mRNA_4649: 13017 - K03934 NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, at 692,072 to 694,733 13017 mRNA_4650: 13018 - K02919 RP-L36, MRPL36, rpmJ large subunit ribosomal protein L36, at 695,007 to 695,565 13018 mRNA_4651: 13019 - Hypothetical Protein, at 696,005 to 696,627 13019

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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694,814 - -0.3
694,831 + -0.5
694,846 + +1.6
694,859 - +1.8
694,861 + +0.0
694,875 - -0.2
694,882 - +0.2
695,125 - 13018 mRNA_4650 0.21 -0.4
695,137 + 13018 mRNA_4650 0.23 +0.3
695,145 + 13018 mRNA_4650 0.25 +0.6
695,286 + 13018 mRNA_4650 0.50 -0.4
695,568 + +0.0
695,607 + +0.4
696,032 - +0.2
696,044 - +2.3
696,301 + 13019 mRNA_4651 0.48 +1.1

Or see this region's nucleotide sequence