Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4743

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4743: 13111 - BLAST Nucleolar protein 4 [Choanephora cucurbitarum], at 903,748 to 904,899 13111

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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902,881 - +0.1
903,021 + +0.2
903,142 - +0.3
903,280 - -0.3
903,340 + +0.2
903,354 - +0.6
903,383 + -1.4
903,397 + -0.7
903,401 - -0.1
903,403 + +0.7
903,467 - -0.9
903,574 + +0.7
903,730 + -0.1
903,738 + +0.1
903,996 - 13111 mRNA_4743 0.22 -0.5
904,032 - 13111 mRNA_4743 0.25 +0.0
904,187 + 13111 mRNA_4743 0.38 -0.4
904,294 - 13111 mRNA_4743 0.47 +1.2
904,323 - 13111 mRNA_4743 0.50 +0.8
905,131 + +0.1
905,212 - +0.7
905,451 + +2.2
905,468 - -1.5
905,469 - +0.0
905,627 - -0.7
905,631 + -0.5
905,631 - +0.3
905,748 + -0.2
905,794 + +0.4
905,801 + -1.5
905,851 - -0.3
905,856 - +0.4
905,865 + +0.3
905,869 - -0.2
905,870 - +0.1
905,883 - -0.4
905,896 - +0.3

Or see this region's nucleotide sequence