Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4804

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13171 and 13172 are separated by 285 nucleotides13172 and 13173 are separated by 912 nucleotides mRNA_4803: 13171 - BLAST ribosomal protein Mrp49 [Schizosaccharomyces octo..., at 1,051,383 to 1,052,079 13171 mRNA_4804: 13172 - HMMPfam-PAP2 superfamily-PF01569, at 1,052,365 to 1,054,205 13172 mRNA_4805: 13173 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,055,118 to 1,056,196 13173

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,052,178 - +2.1
1,052,201 + -0.3
1,052,439 - -0.0
1,052,878 - 13172 mRNA_4804 0.28 -0.4
1,053,033 + 13172 mRNA_4804 0.36 -0.4
1,053,326 - 13172 mRNA_4804 0.52 +0.7
1,053,486 + 13172 mRNA_4804 0.61 -0.7
1,053,489 + 13172 mRNA_4804 0.61 -0.6
1,053,631 + 13172 mRNA_4804 0.69 +0.3
1,053,764 - 13172 mRNA_4804 0.76 -0.6
1,053,772 + 13172 mRNA_4804 0.76 -0.3
1,053,800 - 13172 mRNA_4804 0.78 +0.7
1,053,801 + 13172 mRNA_4804 0.78 +0.6
1,053,895 - 13172 mRNA_4804 0.83 +1.2
1,053,926 - 13172 mRNA_4804 0.85 +1.2
1,053,931 - 13172 mRNA_4804 0.85 -0.4
1,053,949 + 13172 mRNA_4804 0.86 -0.8
1,053,970 + 13172 mRNA_4804 0.87 +0.5
1,053,987 + 13172 mRNA_4804 0.88 -0.1
1,054,076 - -0.6
1,054,083 - +0.7
1,054,086 - -0.4
1,054,090 - +0.9
1,054,121 + +0.4
1,054,128 + +0.7
1,054,142 + +0.3
1,054,243 + +1.8
1,054,251 + -0.7
1,054,253 + +1.1
1,054,258 - +1.0
1,054,258 - -0.8
1,054,261 + -1.3
1,054,263 - +0.0
1,054,269 - -0.8
1,054,277 + -0.1
1,054,283 + +0.4
1,054,413 + +0.1
1,054,414 + -2.2
1,054,423 - -0.2
1,054,426 - +1.2
1,054,440 + -0.6
1,054,556 - +0.0
1,054,575 - -0.2
1,054,703 - -0.3
1,054,717 + -0.0
1,054,719 + +0.9
1,054,722 - -0.2
1,054,724 + -0.3
1,054,728 - +0.6
1,054,741 - -0.6
1,054,743 - +1.4
1,054,778 - -0.2
1,054,786 - -0.1
1,054,788 + -0.4
1,054,877 - -0.1
1,054,913 - +0.3
1,054,922 + -1.0

Or see this region's nucleotide sequence