Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4891

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13259 and 13260 are separated by 268 nucleotides mRNA_4891: 13259 - KOG3140 Predicted membrane protein, at 1,235,999 to 1,237,638 13259 mRNA_4892: 13260 - K00915 IPMK, IPK2 inositol-polyphosphate multikinase, at 1,237,907 to 1,239,157 13260

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,235,187 - +0.1
1,235,203 - -0.9
1,235,223 + +2.2
1,235,350 + -0.6
1,235,356 + +1.8
1,235,366 + +1.9
1,235,367 + +0.0
1,235,374 + -0.2
1,235,376 + +3.1
1,235,468 - +2.0
1,235,518 + +1.8
1,235,677 + +0.0
1,235,794 - +0.0
1,235,818 + -0.6
1,235,956 + +0.9
1,235,965 - +0.9
1,236,111 - +1.1
1,237,033 - 13259 mRNA_4891 0.63 -0.9
1,237,280 - 13259 mRNA_4891 0.78 +1.8
1,237,399 - 13259 mRNA_4891 0.85 -0.1
1,237,409 - 13259 mRNA_4891 0.86 -0.4

Or see this region's nucleotide sequence