Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4943

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13310 and 13311 are separated by 658 nucleotides13311 and 13312 are separated by 320 nucleotides mRNA_4942: 13310 - Hypothetical Protein, at 1,370,208 to 1,371,359 13310 mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1,372,018 to 1,374,079 13311 mRNA_4944: 13312 - KOG1375 Beta tubulin, at 1,374,400 to 1,376,265 13312

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,371,109 - 13310 mRNA_4942 0.78 -1.0
1,371,132 + 13310 mRNA_4942 0.80 -0.7
1,371,149 - 13310 mRNA_4942 0.82 +1.4
1,371,253 + +0.7
1,371,263 - +1.5
1,371,307 + +1.2
1,371,345 + -0.9
1,371,359 + -0.1
1,371,443 - +0.1
1,371,446 - -0.5
1,371,450 + +0.2
1,371,452 + -1.1
1,371,459 - +1.9
1,371,584 - -0.8
1,371,588 + -0.5
1,371,602 + +0.9
1,371,604 - -0.5
1,371,606 - -0.0
1,371,608 + -1.8
1,371,632 + -0.8
1,371,654 + +1.1
1,371,654 + +1.8
1,371,655 - -0.4
1,371,661 - +0.4
1,371,770 + -0.2
1,371,787 - +1.0
1,371,807 - +0.5
1,371,810 + -0.3
1,371,812 + -0.7
1,371,812 + -0.2
1,371,828 - +0.2
1,371,936 - +0.2
1,371,936 - +1.7
1,371,944 + +0.2
1,372,059 - -0.2
1,372,246 - 13311 mRNA_4943 0.11 +1.4
1,373,982 - -1.0
1,374,118 - +0.2
1,374,128 + -1.6
1,374,133 + -0.7
1,374,254 - +0.1
1,374,276 - -1.0
1,374,277 - +1.2
1,374,285 + -0.2
1,374,413 + +0.3
1,374,452 + -0.5

Or see this region's nucleotide sequence