Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4951

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13318 and 13319 are separated by 169 nucleotides13319 and 13320 are separated by 277 nucleotides mRNA_4950: 13318 - K02878 RP-L16, MRPL16, rplP large subunit ribosomal protein L16, at 1,385,064 to 1,386,007 13318 mRNA_4951: 13319 - K15114 ORT1 mitochondrial ornithine carrier protein, at 1,386,177 to 1,387,405 13319 mRNA_4952: 13320 - BLAST Tetratricopeptide-like helical [Xanthophyllomyces den..., at 1,387,683 to 1,389,449 13320

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,386,061 - -0.2
1,386,076 - -0.3
1,386,077 + -0.0
1,386,086 - +0.2
1,386,092 + +0.9
1,386,095 - +1.0
1,386,109 + -0.2
1,386,109 + -0.7
1,386,445 + 13319 mRNA_4951 0.22 -0.9
1,386,523 - 13319 mRNA_4951 0.28 +0.0
1,387,116 - 13319 mRNA_4951 0.76 +0.2
1,387,245 + 13319 mRNA_4951 0.87 -2.0
1,387,315 + -1.6
1,387,533 + +0.9
1,387,685 - -0.4
1,387,713 - +0.5

Or see this region's nucleotide sequence