Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4981

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13348 and 13349 are separated by 223 nucleotides13349 and 13350 are separated by 455 nucleotides mRNA_4980: 13348 - K07432 ALG13 beta-1,4-N-acetylglucosaminyltransferase, at 1,469,023 to 1,469,757 13348 mRNA_4981: 13349 - KOG2117 Uncharacterized conserved protein, at 1,469,981 to 1,471,275 13349 mRNA_4982: 13350 - K17879 NUDT7 peroxisomal coenzyme A diphosphatase NUDT7, at 1,471,731 to 1,473,077 13350

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,469,847 - -0.2
1,471,434 - +0.2
1,471,449 - -0.7
1,471,452 + +1.3
1,471,456 - -3.3
1,471,466 + +0.3
1,471,561 - +2.5
1,471,632 + -0.1
1,471,764 - -2.4
1,471,764 - +0.4
1,471,915 - 13350 mRNA_4982 0.14 -0.1
1,472,105 - 13350 mRNA_4982 0.28 -0.2
1,472,241 + 13350 mRNA_4982 0.38 -0.2

Or see this region's nucleotide sequence