Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5065

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13432 and 13433 are separated by 214 nucleotides13433 and 13434 are separated by 171 nucleotides mRNA_5064: 13432 - K00286 proC pyrroline-5-carboxylate reductase, at 1,665,955 to 1,667,428 13432 mRNA_5065: 13433 - HMMPfam-Mitotic checkpoint regulator, MAD2B-interacting-PF10253, at 1,667,643 to 1,669,072 13433 mRNA_5066: 13434 - KOG3170 Conserved phosducin-like protein, at 1,669,244 to 1,670,342 13434

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,666,881 + 13432 mRNA_5064 0.63 -1.7
1,667,448 - -0.0
1,667,449 - +0.0
1,667,594 - +0.1
1,668,044 - 13433 mRNA_5065 0.28 +1.0
1,668,111 - 13433 mRNA_5065 0.33 -1.1
1,669,014 + +1.5
1,669,052 + -0.4
1,669,352 - -1.5
1,669,642 - 13434 mRNA_5066 0.36 -0.3
1,669,907 + 13434 mRNA_5066 0.60 +0.6
1,670,056 + 13434 mRNA_5066 0.74 +0.3

Or see this region's nucleotide sequence