Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5139

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13506 and 13507 are separated by 189 nucleotides13507 and 13508 are separated by 282 nucleotides mRNA_5138: 13506 - K20359 RABAC1, PRAF1 PRA1 family protein 1, at 1,844,038 to 1,845,081 13506 mRNA_5139: 13507 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 1,845,271 to 1,846,302 13507 mRNA_5140: 13508 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 1,846,585 to 1,847,965 13508

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,844,411 + 13506 mRNA_5138 0.36 +1.0
1,844,668 - 13506 mRNA_5138 0.60 -0.1
1,844,730 - 13506 mRNA_5138 0.66 +0.0
1,844,861 + 13506 mRNA_5138 0.79 +1.0
1,844,987 - +0.7
1,845,040 + +0.5
1,845,172 + -0.9
1,845,414 + 13507 mRNA_5139 0.14 -0.8
1,845,416 + 13507 mRNA_5139 0.14 +1.2
1,845,746 - 13507 mRNA_5139 0.46 +0.7
1,846,024 - 13507 mRNA_5139 0.73 +0.6
1,846,137 + 13507 mRNA_5139 0.84 +0.2
1,846,140 - 13507 mRNA_5139 0.84 -0.5
1,846,263 + +0.3
1,846,300 + +0.1
1,846,300 - +2.7
1,846,303 + +2.0
1,846,336 - +0.2
1,846,417 + +0.6
1,846,427 + -0.7
1,846,436 - +0.8
1,846,438 - +0.9
1,846,444 + -0.2
1,846,456 - -0.4
1,846,461 + -0.7
1,846,462 + +1.2
1,846,465 + -0.4
1,846,469 - -0.1
1,846,470 - -0.9
1,846,472 + +0.5
1,846,477 - -0.1
1,846,482 + +0.6
1,846,482 + +0.5
1,846,484 - +0.8
1,846,495 - +0.6
1,846,504 - +1.5
1,846,511 + +1.1
1,846,519 + -0.4
1,846,538 + +1.7
1,846,554 - -1.5
1,846,644 - -1.8
1,846,648 - +1.1
1,846,648 - +0.5
1,846,649 - +0.1
1,846,649 - -0.2
1,846,655 + +3.1
1,846,658 + +0.8
1,846,660 + +0.6
1,846,663 + -1.0
1,846,669 + -0.7
1,846,797 - 13508 mRNA_5140 0.15 -0.0
1,846,797 - 13508 mRNA_5140 0.15 -0.8
1,846,940 + 13508 mRNA_5140 0.26 -1.2
1,847,086 - 13508 mRNA_5140 0.36 -0.3
1,847,146 + 13508 mRNA_5140 0.41 -0.7
1,847,245 - 13508 mRNA_5140 0.48 +1.6
1,847,249 + 13508 mRNA_5140 0.48 -0.9

Or see this region's nucleotide sequence