Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5250

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13618 and 13619 are separated by 197 nucleotides mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267,361 to 271,776 13618 mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271,974 to 275,743 13619

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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266,382 + -1.0
266,661 - +0.3
266,663 - -0.0
266,788 + +0.7
266,816 + -0.3
266,927 + +0.6
266,954 - +0.8
267,528 - -1.0
267,559 + +0.3
268,415 - 13618 mRNA_5250 0.24 +1.3
268,524 - 13618 mRNA_5250 0.26 -0.6
268,722 + 13618 mRNA_5250 0.31 +0.1
268,803 + 13618 mRNA_5250 0.33 +1.3
269,110 - 13618 mRNA_5250 0.40 -2.0
269,204 + 13618 mRNA_5250 0.42 +0.6
269,206 - 13618 mRNA_5250 0.42 -0.7
269,618 - 13618 mRNA_5250 0.51 +1.1
269,646 - 13618 mRNA_5250 0.52 -0.1
269,651 + 13618 mRNA_5250 0.52 +0.2
269,812 - 13618 mRNA_5250 0.56 +0.9
270,067 + 13618 mRNA_5250 0.61 -0.1
270,439 + 13618 mRNA_5250 0.70 +0.6
270,506 - 13618 mRNA_5250 0.71 +0.6
270,686 - 13618 mRNA_5250 0.75 +0.2
270,956 - 13618 mRNA_5250 0.81 +0.1
270,977 + 13618 mRNA_5250 0.82 +0.9
270,984 + 13618 mRNA_5250 0.82 -1.6
270,984 - 13618 mRNA_5250 0.82 +0.0
271,053 - 13618 mRNA_5250 0.84 +0.4
271,068 + 13618 mRNA_5250 0.84 +1.6
271,239 - 13618 mRNA_5250 0.88 -0.2
271,263 - 13618 mRNA_5250 0.88 -0.2
271,270 - 13618 mRNA_5250 0.89 -0.9
271,284 - 13618 mRNA_5250 0.89 -1.9
271,286 + 13618 mRNA_5250 0.89 +0.5
271,569 - +1.3
271,840 - +0.7
271,842 - -0.4
272,162 - -0.1
272,168 + +0.4
272,667 + 13619 mRNA_5251 0.18 +0.3

Or see this region's nucleotide sequence