Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5318

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13685 and 13686 are separated by 82 nucleotides13686 and 13687 are separated by 712 nucleotides mRNA_5317: 13685 - K17498 SPN1, IWS1 transcription factor SPN1, at 441,871 to 444,778 13685 mRNA_5318: 13686 - KOG4315 G-patch nucleic acid binding protein, at 444,861 to 446,150 13686 mRNA_5319: 13687 - HMMPfam-Plasma-membrane choline transporter-PF04515, at 446,863 to 449,105 13687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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444,765 - +0.5
445,052 - 13686 mRNA_5318 0.15 +1.2
446,205 - -0.5
446,212 + +0.4
446,322 + +2.5
446,542 - -1.2
446,667 - +0.5
446,709 + +0.1
446,825 - -0.4
446,981 - -1.6
447,130 - 13687 mRNA_5319 0.12 -0.5

Or see this region's nucleotide sequence