Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5372

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13739 and 13740 are separated by 416 nucleotides mRNA_5371: 13739 - K03859 PIGC, GPI2 phosphatidylinositol glycan, class C, at 565,702 to 566,965 13739 mRNA_5372: 13740 - K04487 iscS, NFS1 cysteine desulfurase, at 567,382 to 569,979 13740

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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566,913 - +1.5
567,014 + -0.4
567,332 - +0.9
569,047 + 13740 mRNA_5372 0.64 -0.3
570,064 + +1.4
570,120 - -2.0
570,270 + +0.7
570,271 + +0.5
570,271 - -0.4
570,397 - +1.8
570,555 - +1.3
570,569 + -2.2
570,582 - -0.2
570,692 - +0.4
570,709 - -0.0
570,849 - +0.5

Or see this region's nucleotide sequence