Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5484

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13851 and 13852 are separated by 387 nucleotides13852 and 13853 are separated by 684 nucleotides mRNA_5483: 13851 - KOG1339 Aspartyl protease, at 202,681 to 205,111 13851 mRNA_5484: 13852 - K16612 HOOK1 protein HOOK1, at 205,499 to 209,113 13852 mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209,798 to 210,668 13853

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
204,512 + 13851 mRNA_5483 0.75 -1.9
204,990 - -1.3
205,089 - -0.1
205,231 - -0.1
205,249 + +0.7
205,519 + -0.4
205,563 - +0.5
205,572 + +0.0
205,677 - -0.2
205,725 - +0.7
205,779 - +0.1
205,821 - +0.4
205,874 - 13852 mRNA_5484 0.10 +0.1
205,878 + 13852 mRNA_5484 0.10 -2.4
205,878 + 13852 mRNA_5484 0.10 +0.5
205,878 + 13852 mRNA_5484 0.10 +0.1
205,952 + 13852 mRNA_5484 0.13 -0.3
206,103 - 13852 mRNA_5484 0.17 -0.5
206,292 - 13852 mRNA_5484 0.22 +2.4
206,447 + 13852 mRNA_5484 0.26 +0.4
206,695 - 13852 mRNA_5484 0.33 -0.2
206,975 + 13852 mRNA_5484 0.41 +0.4
206,999 - 13852 mRNA_5484 0.41 -0.1
207,116 - 13852 mRNA_5484 0.45 +1.1
207,147 + 13852 mRNA_5484 0.46 +0.2
207,157 - 13852 mRNA_5484 0.46 -0.8
207,577 + 13852 mRNA_5484 0.57 +0.1
207,699 - 13852 mRNA_5484 0.61 +0.1
208,066 + 13852 mRNA_5484 0.71 +0.7
208,147 - 13852 mRNA_5484 0.73 -0.6
208,157 + 13852 mRNA_5484 0.74 +1.5
208,454 + 13852 mRNA_5484 0.82 +0.4
208,459 + 13852 mRNA_5484 0.82 -0.2
208,472 - 13852 mRNA_5484 0.82 +0.3
208,499 - 13852 mRNA_5484 0.83 -0.6
208,861 + +1.2
209,097 + +0.2
209,349 + +0.3
209,360 + -0.0
209,368 - +1.8
210,013 - 13853 mRNA_5485 0.25 -1.3

Or see this region's nucleotide sequence