Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5556

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13923 and 13924 are separated by 387 nucleotides13924 and 13925 are separated by 323 nucleotides mRNA_5555: 13923 - K19984 EXOC5, SEC10 exocyst complex component 5, at 369,453 to 373,843 13923 mRNA_5556: 13924 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 374,231 to 375,171 13924 mRNA_5557: 13925 - K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3, at 375,495 to 376,430 13925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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373,395 - 13923 mRNA_5555 0.90 +0.7
373,674 - -0.3
373,943 + +0.2
373,970 + +0.1
374,081 + -0.5
375,110 - -2.0
375,255 - +0.7
375,274 - -0.7
375,280 - -0.5
375,283 - +1.1
375,289 + +0.8
375,290 - +0.7
375,448 - +0.6
375,553 - -1.3
375,586 - -0.9
375,695 - 13925 mRNA_5557 0.21 -0.4
375,718 + 13925 mRNA_5557 0.24 -0.5
375,894 + 13925 mRNA_5557 0.43 -0.3
376,039 + 13925 mRNA_5557 0.58 -1.2

Or see this region's nucleotide sequence