Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5705

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14072 and 14073 are separated by 634 nucleotides14073 and 14074 overlap by 26 nucleotides mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728,026 to 730,424 14072 mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731,059 to 731,970 14073 mRNA_5706: 14074 - Hypothetical Protein, at 731,945 to 733,165 14074

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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730,270 - +1.2
730,321 - -0.0
730,477 - +0.6
730,570 - -0.6
730,666 - +0.1
730,720 + +0.3
730,732 + -0.7
730,750 + +0.5
730,890 + +0.6
730,902 + +0.6
730,911 - +1.3
731,155 - 14073 mRNA_5705 0.11 +0.8
731,181 - 14073 mRNA_5705 0.13 -0.4
731,212 + 14073 mRNA_5705 0.17 +1.0
731,802 - 14073 mRNA_5705 0.81 +0.2
732,081 + 14074 mRNA_5706 0.11 +0.4
732,085 - 14074 mRNA_5706 0.11 +1.0
732,360 + 14074 mRNA_5706 0.34 +1.0
732,377 + 14074 mRNA_5706 0.35 +0.3
732,381 + 14074 mRNA_5706 0.36 +0.6
732,655 + 14074 mRNA_5706 0.58 +1.4
732,675 + 14074 mRNA_5706 0.60 +0.5
732,845 + 14074 mRNA_5706 0.74 +0.2

Or see this region's nucleotide sequence