Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5907

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14274 and 14275 are separated by 436 nucleotides14275 and 14276 are separated by 180 nucleotides mRNA_5906: 14274 - KOG2568 Predicted membrane protein, at 1,214,923 to 1,217,024 14274 mRNA_5907: 14275 - K02726 PSMA2 20S proteasome subunit alpha 2, at 1,217,461 to 1,218,756 14275 mRNA_5908: 14276 - Hypothetical Protein, at 1,218,937 to 1,220,289 14276

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,216,524 - 14274 mRNA_5906 0.76 -0.3
1,216,684 - 14274 mRNA_5906 0.84 +0.5
1,216,964 + +1.2
1,217,095 + +0.5
1,217,096 + +0.6
1,217,107 - +1.6
1,217,111 + +0.2
1,217,115 - -0.5
1,217,117 + -0.5
1,217,129 + -0.7
1,217,238 - -0.5
1,217,244 + +0.1
1,217,246 + +0.6
1,217,249 + +0.0
1,217,249 - -0.8
1,217,257 + +0.1
1,217,259 + -0.3
1,217,273 - +0.2
1,217,366 - +0.5
1,217,389 - -0.1
1,218,912 - +0.8
1,219,000 + -0.5
1,219,074 + 14276 mRNA_5908 0.10 -0.1
1,219,082 + 14276 mRNA_5908 0.11 +0.9
1,219,094 - 14276 mRNA_5908 0.12 -1.1
1,219,112 - 14276 mRNA_5908 0.13 +0.2
1,219,124 + 14276 mRNA_5908 0.14 -0.2
1,219,126 - 14276 mRNA_5908 0.14 -1.3
1,219,129 - 14276 mRNA_5908 0.14 -1.8
1,219,132 + 14276 mRNA_5908 0.14 +0.2
1,219,143 - 14276 mRNA_5908 0.15 -0.4
1,219,151 - 14276 mRNA_5908 0.16 +0.4
1,219,172 - 14276 mRNA_5908 0.17 -0.0
1,219,174 - 14276 mRNA_5908 0.18 +0.5
1,219,195 - 14276 mRNA_5908 0.19 +1.0
1,219,203 - 14276 mRNA_5908 0.20 +0.1
1,219,210 + 14276 mRNA_5908 0.20 -0.1
1,219,235 - 14276 mRNA_5908 0.22 +0.4
1,219,297 + 14276 mRNA_5908 0.27 -0.3
1,219,327 - 14276 mRNA_5908 0.29 +0.5
1,219,346 + 14276 mRNA_5908 0.30 +0.7
1,219,363 - 14276 mRNA_5908 0.31 -0.9
1,219,380 - 14276 mRNA_5908 0.33 -1.3
1,219,396 + 14276 mRNA_5908 0.34 +1.6
1,219,407 + 14276 mRNA_5908 0.35 +1.2
1,219,420 + 14276 mRNA_5908 0.36 -0.8
1,219,425 - 14276 mRNA_5908 0.36 +0.5
1,219,485 + 14276 mRNA_5908 0.41 -0.9
1,219,493 + 14276 mRNA_5908 0.41 +0.2
1,219,502 + 14276 mRNA_5908 0.42 +0.5
1,219,502 - 14276 mRNA_5908 0.42 +1.3
1,219,536 - 14276 mRNA_5908 0.44 -0.5
1,219,565 - 14276 mRNA_5908 0.46 -0.9
1,219,596 + 14276 mRNA_5908 0.49 +0.2
1,219,652 - 14276 mRNA_5908 0.53 -0.1
1,219,670 + 14276 mRNA_5908 0.54 +0.4
1,219,682 - 14276 mRNA_5908 0.55 +0.5
1,219,691 - 14276 mRNA_5908 0.56 +0.5
1,219,697 + 14276 mRNA_5908 0.56 +2.5
1,219,711 + 14276 mRNA_5908 0.57 -1.4
1,219,716 - 14276 mRNA_5908 0.58 -2.6
1,219,716 + 14276 mRNA_5908 0.58 +2.2
1,219,717 + 14276 mRNA_5908 0.58 -0.4
1,219,719 + 14276 mRNA_5908 0.58 -0.2
1,219,719 + 14276 mRNA_5908 0.58 -0.2
1,219,731 - 14276 mRNA_5908 0.59 +2.1
1,219,732 + 14276 mRNA_5908 0.59 -0.3
1,219,740 + 14276 mRNA_5908 0.59 -0.0
1,219,749 + 14276 mRNA_5908 0.60 +0.1

Or see this region's nucleotide sequence