Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5972

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14339 and 14340 are separated by 266 nucleotides14340 and 14341 are separated by 131 nucleotides14341 and 14342 overlap by 4 nucleotides mRNA_5971: 14339 - Hypothetical Protein, at 1,353,644 to 1,354,802 14339 mRNA_5972: 14340 - K03243 EIF5B translation initiation factor 5B, at 1,355,069 to 1,359,492 14340 mRNA_5973: 14341 - Hypothetical Protein, at 1,359,624 to 1,360,109 14341 mRNA_5974: 14342 - SUPERFAMILY--SSF54909, at 1,360,106 to 1,360,539 14342

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
1,354,176 + 14339 mRNA_5971 0.46 -1.0
1,354,281 - 14339 mRNA_5971 0.55 +1.8
1,354,282 + 14339 mRNA_5971 0.55 -0.2
1,354,291 + 14339 mRNA_5971 0.56 +1.2
1,354,292 + 14339 mRNA_5971 0.56 +0.5
1,354,447 + 14339 mRNA_5971 0.69 +0.4
1,354,455 - 14339 mRNA_5971 0.70 +0.4
1,354,634 + 14339 mRNA_5971 0.85 +0.1
1,354,713 + -0.1
1,354,729 - +0.1
1,354,751 + +2.7
1,354,757 + +0.2
1,354,884 - +0.3
1,354,900 - -0.9
1,354,902 + -0.0
1,354,904 - +0.3
1,354,925 + +2.0
1,355,032 + -0.7
1,356,691 - 14340 mRNA_5972 0.37 -0.4
1,357,216 - 14340 mRNA_5972 0.49 +0.5
1,360,023 + 14341 mRNA_5973 0.82 +0.4
1,360,421 - 14342 mRNA_5974 0.73 +1.7
1,360,444 - 14342 mRNA_5974 0.78 -0.3
1,360,456 + 14342 mRNA_5974 0.81 +0.6
1,360,469 - 14342 mRNA_5974 0.84 -0.9
1,360,478 + 14342 mRNA_5974 0.86 -1.1

Or see this region's nucleotide sequence