Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5996

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14363 and 14364 are separated by 535 nucleotides14364 and 14365 are separated by 321 nucleotides mRNA_5995: 14363 - K14539 LSG1 large subunit GTPase 1, at 1,407,863 to 1,410,284 14363 mRNA_5996: 14364 - BLAST ran GTPase activating protein 1 [Capsaspora owcza..., at 1,410,820 to 1,412,089 14364 mRNA_5997: 14365 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,412,411 to 1,414,490 14365

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
1,410,312 + -0.7
1,410,315 + +0.9
1,410,318 + -0.1
1,410,355 + -0.2
1,410,475 - +0.4
1,410,577 + -0.5
1,410,618 - +1.0
1,410,633 + +0.0
1,410,792 - -0.1
1,410,936 + -0.5
1,410,937 - -2.6
1,410,937 - -1.4
1,410,950 + 14364 mRNA_5996 0.10 +0.9
1,410,953 - 14364 mRNA_5996 0.10 +2.7
1,410,966 + 14364 mRNA_5996 0.11 -0.3
1,411,400 - 14364 mRNA_5996 0.46 +0.7
1,411,406 - 14364 mRNA_5996 0.46 +0.9
1,411,548 - 14364 mRNA_5996 0.57 -0.0
1,411,557 + 14364 mRNA_5996 0.58 +0.1
1,411,614 + 14364 mRNA_5996 0.63 -1.2
1,411,622 - 14364 mRNA_5996 0.63 +0.2
1,411,805 + 14364 mRNA_5996 0.78 -2.5
1,412,059 - +0.2
1,412,093 + +0.6
1,412,099 + +0.1
1,412,867 - 14365 mRNA_5997 0.22 -0.3
1,412,937 + 14365 mRNA_5997 0.25 -1.1
1,412,969 - 14365 mRNA_5997 0.27 +0.9
1,412,983 - 14365 mRNA_5997 0.28 -0.1
1,412,998 + 14365 mRNA_5997 0.28 +0.3
1,413,017 + 14365 mRNA_5997 0.29 +0.2

Or see this region's nucleotide sequence