Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6041

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14408 and 14409 are separated by 600 nucleotides14409 and 14410 are separated by 229 nucleotides mRNA_6040: 14408 - Hypothetical Protein, at 1,500,526 to 1,502,132 14408 mRNA_6041: 14409 - Hypothetical Protein, at 1,502,733 to 1,506,557 14409 mRNA_6042: 14410 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,506,787 to 1,508,526 14410

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,501,928 + 14408 mRNA_6040 0.87 -0.8
1,501,940 + 14408 mRNA_6040 0.88 +1.4
1,502,036 - -0.7
1,502,049 - +0.1
1,502,049 + +1.7
1,502,067 + +0.7
1,502,156 + -0.5
1,502,339 + +0.9
1,502,342 - -0.7
1,502,342 - +0.2
1,502,342 - -1.2
1,502,345 - +1.5
1,502,347 + -0.2
1,502,349 + +0.0
1,502,349 + +0.3
1,502,351 - +0.4
1,502,363 - -0.2
1,502,366 + +0.5
1,502,367 + -0.5
1,502,369 - -0.2
1,502,513 - -0.3
1,502,516 - -0.3
1,502,517 + +1.7
1,502,524 + +0.8
1,502,527 - +0.3
1,502,535 + -0.2
1,502,539 + -0.6
1,502,651 - -0.2
1,502,658 + +1.4
1,502,692 - +0.4
1,506,517 - -1.4
1,506,538 - -2.2
1,506,643 + +0.0
1,506,652 - +0.9
1,506,654 + -0.7
1,506,710 + +1.3
1,506,804 - +1.4
1,506,832 + +2.9
1,506,939 + -0.2
1,506,956 - -0.4
1,506,968 + 14410 mRNA_6042 0.10 +0.0
1,506,979 - 14410 mRNA_6042 0.11 -0.3
1,506,999 - 14410 mRNA_6042 0.12 -0.7
1,506,999 - 14410 mRNA_6042 0.12 +0.0
1,507,106 + 14410 mRNA_6042 0.18 +0.1
1,507,202 - 14410 mRNA_6042 0.24 +0.1
1,507,216 - 14410 mRNA_6042 0.25 +1.2
1,507,255 + 14410 mRNA_6042 0.27 +1.0
1,507,282 + 14410 mRNA_6042 0.28 -0.5
1,507,285 + 14410 mRNA_6042 0.29 +1.0
1,507,285 - 14410 mRNA_6042 0.29 +0.9
1,507,287 + 14410 mRNA_6042 0.29 +0.5
1,507,509 - 14410 mRNA_6042 0.41 -0.5
1,507,518 + 14410 mRNA_6042 0.42 +1.0
1,507,518 + 14410 mRNA_6042 0.42 +0.3
1,507,521 - 14410 mRNA_6042 0.42 -0.5
1,507,549 + 14410 mRNA_6042 0.44 +1.1

Or see this region's nucleotide sequence