Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6072

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14439 and 14440 are separated by 214 nucleotides14440 and 14441 are separated by 90 nucleotides mRNA_6071: 14439 - Hypothetical Protein, at 1,577,289 to 1,577,537 14439 mRNA_6072: 14440 - Hypothetical Protein, at 1,577,752 to 1,580,946 14440 mRNA_6073: 14441 - Hypothetical Protein, at 1,581,037 to 1,581,657 14441

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,576,832 - -2.9
1,576,961 - -0.1
1,577,142 - +0.1
1,577,147 - -1.2
1,577,329 - 14439 mRNA_6071 0.16 +1.0
1,577,421 + 14439 mRNA_6071 0.53 +0.9
1,577,521 - -1.2
1,577,600 + -0.6
1,577,633 + +0.3
1,577,674 - +1.1
1,577,760 + -0.1
1,578,213 - 14440 mRNA_6072 0.14 -0.7
1,578,446 - 14440 mRNA_6072 0.22 +0.6
1,578,470 + 14440 mRNA_6072 0.22 -1.2
1,578,866 - 14440 mRNA_6072 0.35 +0.1
1,578,941 + 14440 mRNA_6072 0.37 -3.5
1,579,234 - 14440 mRNA_6072 0.46 -1.1
1,579,528 + 14440 mRNA_6072 0.56 +0.1
1,579,529 - 14440 mRNA_6072 0.56 -2.1
1,579,719 + 14440 mRNA_6072 0.62 +0.7
1,579,854 - 14440 mRNA_6072 0.66 +1.0
1,580,100 + 14440 mRNA_6072 0.73 +1.2
1,580,137 + 14440 mRNA_6072 0.75 -0.2
1,580,393 + 14440 mRNA_6072 0.83 -0.4
1,580,502 + 14440 mRNA_6072 0.86 +0.4
1,580,600 - 14440 mRNA_6072 0.89 -0.3
1,581,198 - 14441 mRNA_6073 0.26 +0.0
1,581,290 - 14441 mRNA_6073 0.41 -0.8
1,581,449 - 14441 mRNA_6073 0.66 -1.7
1,581,584 + 14441 mRNA_6073 0.88 +1.7

Or see this region's nucleotide sequence