Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6164

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14531 and 14532 are separated by 126 nucleotides14532 and 14533 are separated by 191 nucleotides mRNA_6163: 14531 - HMMPfam-Autophagy protein 16 (ATG16)-PF08614, at 148,660 to 149,493 14531 mRNA_6164: 14532 - BLAST ECSIT domain-containing protein [Rhizoctonia solani A..., at 149,620 to 151,505 14532 mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151,697 to 155,852 14533

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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148,729 + +1.0
148,995 + 14531 mRNA_6163 0.40 -0.1
149,271 + 14531 mRNA_6163 0.73 +1.1
149,277 - 14531 mRNA_6163 0.74 +0.7
149,427 + -0.4
149,535 - +2.6
149,552 + -0.3
149,554 - +1.1
149,556 - -0.4
149,578 + -1.2
151,574 - -0.3
151,868 - -0.1
151,895 - +0.8

Or see this region's nucleotide sequence