Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6227

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14594 and 14595 are separated by 966 nucleotides mRNA_6226: 14594 - Hypothetical Protein, at 297,535 to 298,697 14594 mRNA_6227: 14595 - BLAST DEAD box helicase [Trichophyton violaceum], at 299,664 to 299,897 14595

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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298,664 + +0.3
298,755 + -0.1
298,756 - -0.0
298,757 + -0.8
298,764 + +0.8
298,953 + -0.6
299,024 + +0.2
299,095 - -2.4
299,099 - +0.7
299,105 + +0.9
299,105 - +0.5
299,106 + +1.4
299,147 - +1.5
299,151 + +1.3
299,159 - +0.9
299,160 + -0.7
299,205 + -0.3
299,207 - +1.9
299,230 + -0.7
299,787 + 14595 mRNA_6227 0.53 +1.2
299,907 + -1.0
299,919 - -0.4
299,921 + -0.6
299,931 + +0.5
299,935 - -0.1
299,938 + +0.2
299,946 + -0.9
299,971 - -0.3
299,976 - +0.2
299,977 + +1.1
299,984 + +1.5
300,013 - +0.7
300,014 - +1.3
300,022 - -0.7
300,030 + -1.7
300,287 + -1.2
300,306 + +1.2
300,851 - -0.1

Or see this region's nucleotide sequence