Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6257

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14624 and 14625 are separated by 257 nucleotides14625 and 14626 are separated by 842 nucleotides mRNA_6256: 14624 - Hypothetical Protein, at 367,934 to 368,444 14624 mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368,702 to 371,060 14625 mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371,903 to 374,480 14626

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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367,709 + -1.1
367,723 - +0.4
367,727 - +0.1
367,730 - -0.3
367,741 - +0.7
367,742 - +2.1
367,864 + +1.2
367,879 - -0.4
367,893 + -0.3
367,910 + -0.9
368,071 + 14624 mRNA_6256 0.27 -0.7
368,201 - 14624 mRNA_6256 0.52 +0.9
368,287 - 14624 mRNA_6256 0.69 -0.2
368,329 - 14624 mRNA_6256 0.77 +0.9
368,360 + 14624 mRNA_6256 0.83 -0.2
368,505 - -0.6
368,510 + -0.9
368,608 - -0.7
368,655 + +0.6
368,951 - 14625 mRNA_6257 0.11 -0.2
369,082 + 14625 mRNA_6257 0.16 -0.1
369,241 + 14625 mRNA_6257 0.23 +2.9
370,093 + 14625 mRNA_6257 0.59 +0.6
370,676 + 14625 mRNA_6257 0.84 +0.8
370,696 + 14625 mRNA_6257 0.85 +1.9
370,858 + +0.9
371,002 - +0.5
371,210 - +0.0
371,293 + -1.3

Or see this region's nucleotide sequence