Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6468

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14835 and 14836 are separated by 482 nucleotides14836 and 14837 are separated by 111 nucleotides mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850,077 to 853,413 14835 mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853,896 to 857,931 14836 mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858,043 to 864,348 14837

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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853,044 + 14835 mRNA_6467 0.89 -1.4
853,284 + +0.6
853,354 + +0.3
853,377 - -0.2
853,382 + -1.1
853,455 + -0.4
853,586 - +0.6
853,589 - -0.8
853,797 - +1.5
853,911 - +0.1
854,032 - -1.3
854,083 + -0.6
854,320 - 14836 mRNA_6468 0.11 +1.5
857,804 + +0.0
857,872 + -0.7
857,900 + -0.4
858,041 + -1.0
858,150 - +0.5

Or see this region's nucleotide sequence