Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6484

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14851 and 14852 overlap by 11 nucleotides mRNA_6483: 14851 - Hypothetical Protein, at 894,956 to 895,414 14851 mRNA_6484: 14852 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 895,404 to 896,559 14852

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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894,431 - +0.0
894,460 - +0.7
894,465 + +0.1
894,480 + -0.2
894,514 + -0.1
894,561 - +0.1
894,596 + +0.2
894,755 + +0.4
894,768 - +1.9
894,788 + +0.5
894,802 + -0.3
895,140 - 14851 mRNA_6483 0.40 -0.1
895,283 - 14851 mRNA_6483 0.71 -0.3
895,321 + 14851 mRNA_6483 0.80 +1.1
895,354 - 14851 mRNA_6483 0.87 +0.1
895,446 - -0.5
895,458 + +0.0
895,490 + +0.3
895,504 + +2.0
895,636 - 14852 mRNA_6484 0.20 +0.4
895,650 + 14852 mRNA_6484 0.21 +1.9
895,651 + 14852 mRNA_6484 0.21 +0.1
895,652 + 14852 mRNA_6484 0.21 -0.0
896,183 + 14852 mRNA_6484 0.67 -0.7
896,640 + -1.6
897,065 - -0.5
897,339 + -0.1
897,387 + -0.6

Or see this region's nucleotide sequence