Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6490

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14857 and 14858 are separated by 359 nucleotides14858 and 14859 are separated by 291 nucleotides mRNA_6489: 14857 - KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases, at 907,944 to 911,303 14857 mRNA_6490: 14858 - KOG1698 Mitochondrial/chloroplast ribosomal protein L19, at 911,663 to 912,456 14858 mRNA_6491: 14859 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 912,748 to 918,213 14859

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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910,824 + 14857 mRNA_6489 0.86 -0.1
911,132 - -0.4
911,228 + -0.2
911,263 - +1.0
911,264 - +1.7
911,566 - -0.0
911,661 - +1.8
912,405 + +1.6
912,748 - +0.5
912,750 + -0.0
912,759 + +0.7
912,890 + +1.7
913,187 - +0.4
913,188 + -0.4
913,344 - 14859 mRNA_6491 0.11 -0.2
913,357 - 14859 mRNA_6491 0.11 -1.0
913,454 + 14859 mRNA_6491 0.13 +0.3

Or see this region's nucleotide sequence