Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6760

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15127 and 15128 are separated by 341 nucleotides15128 and 15129 are separated by 304 nucleotides mRNA_6759: 15127 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 75,828 to 77,290 15127 mRNA_6760: 15128 - Hypothetical Protein, at 77,632 to 78,666 15128 mRNA_6761: 15129 - K00944 AK3 nucleoside-triphosphate--adenylate kinase, at 78,971 to 80,180 15129

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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76,706 - 15127 mRNA_6759 0.60 +0.5
76,761 + 15127 mRNA_6759 0.64 +1.3
76,923 - 15127 mRNA_6759 0.75 +1.2
76,971 - 15127 mRNA_6759 0.78 -0.1
77,065 - 15127 mRNA_6759 0.85 +0.6
77,216 + -1.2
77,217 + +1.2
77,349 - +1.4
77,532 - -0.3
77,545 - +0.9
77,548 + -0.1
77,557 + +0.3
77,566 - +0.3
77,613 + +1.0
77,733 - -0.2
77,734 + +1.5
78,588 - +0.0
78,594 + +0.5
78,864 - +2.3
78,867 + -0.6
78,875 + -0.3
79,038 + -0.1
79,131 + 15129 mRNA_6761 0.13 +0.4
79,164 - 15129 mRNA_6761 0.16 -0.1
79,172 - 15129 mRNA_6761 0.17 +0.2
79,348 - 15129 mRNA_6761 0.31 -0.8
79,446 + 15129 mRNA_6761 0.39 -0.3
79,481 + 15129 mRNA_6761 0.42 +0.0
79,606 + 15129 mRNA_6761 0.52 +0.9
79,666 + 15129 mRNA_6761 0.57 +1.1

Or see this region's nucleotide sequence