Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6778

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15146 and 15147 are separated by 67 nucleotides mRNA_6778: 15146 - K00565 RNMT mRNA (guanine-N7-)-methyltransferase, at 113,056 to 114,676 15146 mRNA_6779: 15147 - K10998 CSM3, SWI3 replication fork protection complex subunit Csm3/Swi3, at 114,744 to 115,894 15147

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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112,116 - -1.1
112,311 + +0.2
112,396 + +0.1
112,440 + +3.4
112,749 - -0.1
112,750 - +1.8
112,819 - +0.9
112,832 - -0.8
112,877 - +0.3
112,922 - +2.4
112,925 - -0.8
112,926 - -0.2
112,927 - +0.0
112,927 - +1.4
113,236 + 15146 mRNA_6778 0.11 +2.1
114,671 - -0.0
114,706 - +0.6

Or see this region's nucleotide sequence