Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6917

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15284 and 15285 are separated by 236 nucleotides mRNA_6916: 15284 - SUPERFAMILY--SSF52833, at 426,501 to 427,574 15284 mRNA_6917: 15285 - K04883 KCNAB2 potassium voltage-gated channel Shaker-related subfamily A, beta member 2, at 427,811 to 428,744 15285

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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426,841 - 15284 mRNA_6916 0.32 +0.6
427,018 + 15284 mRNA_6916 0.48 +0.7
427,277 - 15284 mRNA_6916 0.72 -0.2
427,324 - 15284 mRNA_6916 0.77 -0.3
427,542 - +0.3
427,738 - +1.5
428,363 - 15285 mRNA_6917 0.59 +1.8
428,622 + 15285 mRNA_6917 0.87 -1.2
428,635 - 15285 mRNA_6917 0.88 +0.5
428,647 + 15285 mRNA_6917 0.90 +0.5
428,940 - -0.0
429,204 - +0.0
429,239 + -0.3
429,314 - -1.1
429,332 + -0.7
429,369 - -0.4
429,394 + -1.6
429,425 + +0.1
429,500 - +1.5
429,509 + -0.3
429,512 - +0.3
429,516 - -0.3
429,522 - +0.8
429,522 - +0.0
429,527 + -0.1
429,550 + -0.2
429,557 + +0.7
429,564 + +1.5
429,596 + +0.5
429,597 - +0.9
429,600 + +0.9
429,609 + -0.2
429,612 - +0.4
429,621 - +1.0
429,626 - -1.7
429,634 + +0.0
429,651 - +0.4
429,661 - +0.5

Or see this region's nucleotide sequence