Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6975

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15342 and 15343 are separated by 656 nucleotides mRNA_6974: 15342 - K17686 copA, ATP7 Cu+-exporting ATPase, at 574,442 to 577,802 15342 mRNA_6975: 15343 - Hypothetical Protein, at 578,459 to 580,488 15343

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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577,638 + -0.9
577,663 - -0.1
577,670 + -0.5
577,803 + +1.0
577,804 - +0.5
577,814 + +1.7
577,933 + +1.4
577,950 - -0.6
577,958 + -0.5
577,962 + -0.8
577,964 + -1.6
577,967 + +0.5
577,977 + +2.2
577,981 - -1.2
577,981 + -0.6
578,087 - +2.2
578,110 + +0.9
578,327 + -0.3
578,418 - -0.4
578,715 + 15343 mRNA_6975 0.13 +0.7
579,001 + 15343 mRNA_6975 0.27 +1.1
579,150 - 15343 mRNA_6975 0.34 +0.5
579,285 + 15343 mRNA_6975 0.41 +1.0
579,565 - 15343 mRNA_6975 0.54 +0.7
579,586 - 15343 mRNA_6975 0.56 +1.8
579,587 - 15343 mRNA_6975 0.56 +0.0
579,737 - 15343 mRNA_6975 0.63 +1.1
580,034 - 15343 mRNA_6975 0.78 +0.2
580,045 - 15343 mRNA_6975 0.78 -0.0
580,184 + 15343 mRNA_6975 0.85 +0.5
580,331 - -0.2
580,333 + -0.1
580,342 + +0.7
580,350 + +1.7
580,350 + -0.5
580,364 - +0.2
580,378 + +0.6
580,490 - +0.4
580,497 + +0.1
580,539 + +0.7
580,641 - +0.6
580,644 + +0.1
580,645 - +0.3
580,647 + -0.1
580,651 + +0.5
580,653 + +0.9
580,664 + +1.1
580,677 - +0.1
580,789 - +0.6
580,790 + +0.2
580,798 - -1.0
580,799 + -0.4
580,799 - -0.0
580,801 + +1.6
580,804 - -0.2
580,808 + -0.8
580,810 - +0.5
580,816 - +1.2
580,816 - +0.1
580,817 - -1.2
580,819 + +1.2
580,823 + +0.3
580,824 + +1.4
580,825 - -0.5
580,828 + +0.9
580,828 + +0.7
580,829 - +0.5
580,829 + +0.5
580,831 + +1.1
580,834 - +0.2
580,835 - +1.6
580,843 - +0.1
580,849 + +0.4
580,849 + +1.0
580,849 + +0.3
580,849 + +2.8
580,851 + -0.3
580,884 + +0.9
580,902 - +2.2
580,909 + +1.5
580,913 - +0.6
580,917 + -0.8
580,920 - +0.3
580,924 + +0.0
580,925 + -1.4
580,928 + +0.9
580,931 + -0.5
580,938 + +0.5
580,939 + +0.9
580,944 + +0.0
580,944 - -0.2
580,952 + +0.6
580,952 - -0.3
580,959 + +0.8
580,987 - -0.9
581,029 + +0.8
581,087 + -0.4
581,089 - -0.1
581,090 - +0.1
581,091 + -0.1
581,096 - +0.1
581,097 + -0.3
581,113 + +1.1
581,129 - +1.8
581,137 + +0.2
581,144 + +0.3
581,224 - -0.8
581,227 - +0.2
581,235 + +0.0
581,243 - -1.1
581,246 - +0.4
581,258 + -0.5
581,262 + +0.3
581,268 + -0.2
581,400 + -0.8
581,412 - -0.2
581,412 - +0.5
581,423 + +0.0
581,475 + +1.1
581,478 + -0.2
581,488 + -0.0

Or see this region's nucleotide sequence