Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7108

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15475 and 15476 are separated by 136 nucleotides15476 and 15477 are separated by 323 nucleotides mRNA_7107: 15475 - KOG2950 Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain, at 897,416 to 899,091 15475 mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899,228 to 903,559 15476 mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903,883 to 906,158 15477

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
898,355 - 15475 mRNA_7107 0.56 +0.0
898,923 - 15475 mRNA_7107 0.90 +0.5
899,064 - +0.1
899,208 + -0.9
899,315 + +0.1
899,383 - +0.4
899,498 - +0.0
899,551 - -0.6
899,897 + 15476 mRNA_7108 0.15 -0.4
899,928 - 15476 mRNA_7108 0.16 +0.2
900,230 + 15476 mRNA_7108 0.23 +1.7
900,351 - 15476 mRNA_7108 0.26 +0.3
900,396 + 15476 mRNA_7108 0.27 +0.5
900,873 + 15476 mRNA_7108 0.38 -1.8
901,004 + 15476 mRNA_7108 0.41 +0.8
901,120 - 15476 mRNA_7108 0.44 +0.4
901,375 + 15476 mRNA_7108 0.50 -1.6
901,533 + 15476 mRNA_7108 0.53 +0.6
901,718 + 15476 mRNA_7108 0.57 +0.1
901,823 + 15476 mRNA_7108 0.60 +0.3
901,853 + 15476 mRNA_7108 0.61 +0.8
902,585 + 15476 mRNA_7108 0.77 -0.5
902,674 + 15476 mRNA_7108 0.80 +0.6
903,092 + 15476 mRNA_7108 0.89 +0.5
903,105 + 15476 mRNA_7108 0.89 -0.3
903,248 - +1.0
903,294 + +0.1
903,390 + +0.9
903,408 - +2.2
903,427 + -1.4
903,429 + +1.7
903,690 + +1.3
903,721 - +0.5
903,723 + -0.4
903,745 + +0.1
903,894 - -0.3
903,902 + -0.7
904,066 - +0.1
904,505 - 15477 mRNA_7109 0.27 +0.8

Or see this region's nucleotide sequence