Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7131

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15498 and 15499 are separated by 451 nucleotides15499 and 15500 are separated by 222 nucleotides mRNA_7130: 15498 - KOG3077 Uncharacterized conserved protein, at 948,006 to 949,396 15498 mRNA_7131: 15499 - K17800 LETM1, MDM38 LETM1 and EF-hand domain-containing protein 1, mitochondrial, at 949,848 to 952,557 15499 mRNA_7132: 15500 - K16938 SEPT3_9_12 septin 3/9/12, at 952,780 to 954,588 15500

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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949,160 - 15498 mRNA_7130 0.83 +1.2
949,588 + -1.5
949,603 + +1.4
949,746 - -0.5
951,381 - 15499 mRNA_7131 0.57 +0.6
951,834 - 15499 mRNA_7131 0.73 -1.0
951,941 - 15499 mRNA_7131 0.77 -1.3
951,986 - 15499 mRNA_7131 0.79 +0.1
952,136 + 15499 mRNA_7131 0.84 -0.6
952,262 - 15499 mRNA_7131 0.89 +0.2
952,443 - -0.0
952,575 - -0.4
952,584 - +2.3
952,589 - -0.5
952,604 - +0.2
952,719 - -0.6
952,744 + -0.4
952,811 - +0.2
953,325 + 15500 mRNA_7132 0.30 +1.2

Or see this region's nucleotide sequence