Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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14 + +0.2
14 + -2.6
14 + +1.3
14 + -0.2
22 + +0.2
29 + -0.4
35 + -0.9
45 + -0.0
66 + -1.4
68 + +1.6
71 - -2.2
105 + +0.5
120 - -0.4
120 + -0.4
121 - -0.0
122 - -1.8
126 + +0.1
126 + -1.0
131 - -0.3
135 - +0.0
135 + -1.6
135 + +1.2
135 + -1.0
135 - +0.7
142 - +0.8
148 + +2.4
153 + -0.0
159 - -0.3
159 - -0.2
161 + +1.2
168 - -0.1
195 + -0.3
233 + -0.1
263 + 15688 mRNA_7320 0.11 -0.5
267 - 15688 mRNA_7320 0.11 -2.3
301 - 15688 mRNA_7320 0.14 +0.2
310 - 15688 mRNA_7320 0.14 -0.3
313 + 15688 mRNA_7320 0.15 -1.5
313 + 15688 mRNA_7320 0.15 -0.5
319 + 15688 mRNA_7320 0.15 +0.8
322 - 15688 mRNA_7320 0.15 +0.2
340 - 15688 mRNA_7320 0.16 +1.4
345 + 15688 mRNA_7320 0.17 +0.0
357 + 15688 mRNA_7320 0.18 +1.5
359 + 15688 mRNA_7320 0.18 +0.8
365 - 15688 mRNA_7320 0.18 +0.9
401 - 15688 mRNA_7320 0.21 -0.1
401 - 15688 mRNA_7320 0.21 -0.6
401 + 15688 mRNA_7320 0.21 +1.7
405 + 15688 mRNA_7320 0.21 +0.4
415 + 15688 mRNA_7320 0.22 +0.5
428 - 15688 mRNA_7320 0.23 +0.1
461 - 15688 mRNA_7320 0.25 -1.3
462 + 15688 mRNA_7320 0.25 -1.0
466 - 15688 mRNA_7320 0.25 +0.7
482 + 15688 mRNA_7320 0.26 +0.2
488 - 15688 mRNA_7320 0.27 +0.1
573 - 15688 mRNA_7320 0.33 +0.2
594 - 15688 mRNA_7320 0.34 +0.5
595 + 15688 mRNA_7320 0.34 +0.8
595 + 15688 mRNA_7320 0.34 +0.1
625 - 15688 mRNA_7320 0.36 -0.2
644 + 15688 mRNA_7320 0.38 +0.5
644 + 15688 mRNA_7320 0.38 +0.2
648 + 15688 mRNA_7320 0.38 -0.7
654 - 15688 mRNA_7320 0.38 +0.1
654 + 15688 mRNA_7320 0.38 +0.7
713 + 15688 mRNA_7320 0.43 +0.4
753 - 15688 mRNA_7320 0.45 +0.4
756 - 15688 mRNA_7320 0.46 +0.8
763 + 15688 mRNA_7320 0.46 -1.0
765 + 15688 mRNA_7320 0.46 +0.3
778 + 15688 mRNA_7320 0.47 -2.0
811 - 15688 mRNA_7320 0.49 -0.4
921 + 15688 mRNA_7320 0.57 -0.4
945 + 15688 mRNA_7320 0.59 +0.2
1,059 + 15688 mRNA_7320 0.67 -0.0
1,167 + 15688 mRNA_7320 0.74 +0.2
1,174 + 15688 mRNA_7320 0.75 +1.6
1,182 - 15688 mRNA_7320 0.75 -0.3
1,196 + 15688 mRNA_7320 0.76 +1.0
1,218 + 15688 mRNA_7320 0.78 -0.5
1,258 + 15688 mRNA_7320 0.81 -0.5
1,326 - 15688 mRNA_7320 0.85 +0.1
1,360 + 15688 mRNA_7320 0.88 -1.2
1,366 + 15688 mRNA_7320 0.88 +0.2
1,497 - +0.2
1,518 + +0.2
1,582 + -0.4
1,666 - +0.6
1,675 + +0.1
1,789 - +0.1
1,907 + -0.6
1,929 + +0.2
1,948 + +1.5
2,105 - +0.4
2,297 - 15689 mRNA_7321 0.19 -0.3
2,508 - 15689 mRNA_7321 0.31 +1.3
2,521 + 15689 mRNA_7321 0.32 +0.7
2,526 + 15689 mRNA_7321 0.32 +0.1
2,529 - 15689 mRNA_7321 0.32 +1.3
2,529 - 15689 mRNA_7321 0.32 -0.1

Or see this region's nucleotide sequence