Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7367

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15734 and 15735 are separated by 811 nucleotides15735 and 15736 are separated by 339 nucleotides mRNA_7366: 15734 - SUPERFAMILY--SSF57701, at 104,446 to 105,512 15734 mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106,324 to 107,108 15735 mRNA_7368: 15736 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 107,448 to 110,616 15736

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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105,656 - +0.0
105,677 + +0.7
105,758 + -0.1
105,799 + +0.4
105,805 - +1.4
105,809 - +1.3
105,911 + -0.0
105,913 - +0.2
105,915 + +0.1
105,938 - +0.9
105,942 - +0.1
105,943 + -0.0
105,955 - +1.4
106,231 - -1.6
106,235 + +0.4
106,237 - +1.1
106,254 - +0.8
106,271 + +0.1
106,271 - +0.3
106,274 + -0.3
106,387 + +0.4
106,387 - +1.6
106,408 + 15735 mRNA_7367 0.11 -0.4
106,408 - 15735 mRNA_7367 0.11 -0.1
106,578 + 15735 mRNA_7367 0.32 +0.8
106,644 - 15735 mRNA_7367 0.41 -0.6
106,692 - 15735 mRNA_7367 0.47 -0.4
106,724 + 15735 mRNA_7367 0.51 +1.9
106,855 - 15735 mRNA_7367 0.68 -0.2
106,887 - 15735 mRNA_7367 0.72 -0.2
106,892 + 15735 mRNA_7367 0.72 +0.0
107,196 + -0.6
107,432 - +0.3
107,440 - -0.5
107,445 - +1.9
107,599 - +0.6
107,759 + +0.6
107,777 - 15736 mRNA_7368 0.10 -0.5
108,049 + 15736 mRNA_7368 0.19 +0.2

Or see this region's nucleotide sequence