Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7377

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15744 and 15745 are separated by 216 nucleotides mRNA_7376: 15744 - K19030 PFKFB4 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4, at 128,141 to 130,355 15744 mRNA_7377: 15745 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 130,572 to 131,007 15745

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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129,848 - 15744 mRNA_7376 0.77 +1.4
130,075 - 15744 mRNA_7376 0.87 -0.0
130,123 - 15744 mRNA_7376 0.89 -0.2
130,132 + 15744 mRNA_7376 0.90 -0.0
130,162 + -0.2
130,418 - +0.1
130,433 - +0.5
130,436 - +0.6
130,444 + +2.0
130,448 + +0.4
130,586 - +1.4
130,595 - -0.2
130,621 + 15745 mRNA_7377 0.11 -0.0
130,623 + 15745 mRNA_7377 0.12 -1.1
130,645 - 15745 mRNA_7377 0.17 +0.3
130,645 + 15745 mRNA_7377 0.17 -0.6
130,658 + 15745 mRNA_7377 0.20 -1.0
130,669 + 15745 mRNA_7377 0.22 +0.3
130,704 + 15745 mRNA_7377 0.30 +0.2
130,726 - 15745 mRNA_7377 0.35 +0.1
130,739 + 15745 mRNA_7377 0.38 +0.3
130,742 + 15745 mRNA_7377 0.39 +0.7
130,743 + 15745 mRNA_7377 0.39 -1.8
130,759 - 15745 mRNA_7377 0.43 -0.9
130,992 - +1.5
131,043 + -0.2
131,139 - -0.4
131,164 - +2.0
131,165 + +0.9
131,292 + +0.3
131,462 + -0.1
131,608 - +0.6
131,638 - +1.0
131,885 - -0.4
131,887 - +0.9
131,898 + -0.1
131,911 + +1.5
131,915 - +0.8
131,953 - -1.9

Or see this region's nucleotide sequence