Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7386

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15753 and 15754 are separated by 159 nucleotides15754 and 15755 are separated by 293 nucleotides mRNA_7385: 15753 - ProSiteProfiles-Ubiquitin-interacting motif (UIM) repeat profile.-PS50330, at 154,422 to 157,963 15753 mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158,123 to 159,294 15754 mRNA_7387: 15755 - Hypothetical Protein, at 159,588 to 160,374 15755

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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157,199 + 15753 mRNA_7385 0.78 +0.2
157,295 - 15753 mRNA_7385 0.81 -0.8
157,296 + 15753 mRNA_7385 0.81 -0.2
157,487 + 15753 mRNA_7385 0.87 +2.4
157,652 + +0.5
157,742 - +0.2
157,862 - +0.2
158,223 - +1.0
158,329 + 15754 mRNA_7386 0.18 -0.2
158,333 - 15754 mRNA_7386 0.18 -1.3
158,399 - 15754 mRNA_7386 0.24 +0.1
158,492 + 15754 mRNA_7386 0.31 +0.9
158,496 - 15754 mRNA_7386 0.32 -0.3
158,508 + 15754 mRNA_7386 0.33 -1.6
159,659 + +0.9
159,699 - 15755 mRNA_7387 0.14 -0.7
159,932 - 15755 mRNA_7387 0.44 +0.2

Or see this region's nucleotide sequence