Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7455

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15822 and 15823 are separated by 519 nucleotides15823 and 15824 are separated by 355 nucleotides mRNA_7454: 15822 - K01412 PMPCA, MAS2 mitochondrial-processing peptidase subunit alpha, at 312,839 to 314,664 15822 mRNA_7455: 15823 - KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17, at 315,184 to 315,974 15823 mRNA_7456: 15824 - Hypothetical Protein, at 316,330 to 316,788 15824

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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314,763 - -0.5
314,806 + +0.9
314,812 + +1.5
314,816 + +0.0
314,824 - -0.5
314,832 + +1.2
314,940 - -0.2
314,956 - +1.8
314,956 + +0.1
314,984 + +0.6
315,097 - +0.0
315,827 + 15823 mRNA_7455 0.81 +0.0
315,848 + 15823 mRNA_7455 0.84 +1.1
315,980 + -0.5
316,268 + +0.1
316,398 + 15824 mRNA_7456 0.15 +1.4
316,415 + 15824 mRNA_7456 0.19 +0.3
316,555 + 15824 mRNA_7456 0.49 +0.5
316,560 - 15824 mRNA_7456 0.50 +0.3
316,646 - 15824 mRNA_7456 0.69 +1.1
316,685 - 15824 mRNA_7456 0.77 -0.2
316,686 - 15824 mRNA_7456 0.78 -1.0
316,720 - 15824 mRNA_7456 0.85 +1.4
316,839 - +2.5
316,859 + +0.0
316,867 + -0.2
316,907 + -1.0
316,930 + +0.3
316,937 - -0.9
316,944 + +0.9
316,959 + -1.2

Or see this region's nucleotide sequence