Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7701

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16068 and 16069 are separated by 602 nucleotides16069 and 16070 are separated by 446 nucleotides mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874,959 to 876,595 16068 mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877,198 to 880,311 16069 mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880,758 to 882,745 16070

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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876,225 + 16068 mRNA_7700 0.77 +0.6
876,339 + 16068 mRNA_7700 0.84 +0.9
876,481 - -0.2
876,495 + +0.3
876,517 + -0.2
876,524 - +0.0
876,564 - +1.1
876,641 - -0.4
876,661 + -1.6
876,669 + -0.2
876,761 - -1.3
876,809 - +0.3
876,823 + -0.4
876,824 + -0.1
876,839 + -0.0
876,839 + +0.9
876,940 + -1.1
876,942 - -1.4
876,946 - +1.5
876,946 - -1.0
876,948 - -0.0
876,950 - +0.4
876,950 - -0.3
876,951 + +0.0
876,960 - -1.6
876,961 - -0.1
876,994 - +0.9
877,009 + -0.1
877,020 + +0.2
877,035 + +1.5
877,099 + +0.6
877,113 - +0.5
877,121 + +0.5
877,137 + -0.4
877,145 - -0.1
877,151 - +0.7
877,152 + -0.0
877,173 + -0.6
877,249 - -0.3
877,259 + +1.0
877,319 + +0.4
877,379 - +0.2
877,401 + -0.5
877,409 + +0.7
877,415 - +0.1
877,546 + 16069 mRNA_7701 0.11 +0.4
877,709 + 16069 mRNA_7701 0.16 +0.2
877,714 + 16069 mRNA_7701 0.17 -0.1
878,126 - 16069 mRNA_7701 0.30 +0.4
878,258 + 16069 mRNA_7701 0.34 +0.2
878,593 - 16069 mRNA_7701 0.45 +0.3
878,600 + 16069 mRNA_7701 0.45 +0.8
878,758 + 16069 mRNA_7701 0.50 -0.1
879,033 + 16069 mRNA_7701 0.59 +0.2
879,180 + 16069 mRNA_7701 0.64 +0.7
879,368 - 16069 mRNA_7701 0.70 +1.3
879,602 + 16069 mRNA_7701 0.77 +0.3
879,785 + 16069 mRNA_7701 0.83 +0.8
879,915 - 16069 mRNA_7701 0.87 +0.4
879,915 - 16069 mRNA_7701 0.87 -0.1
879,927 + 16069 mRNA_7701 0.88 -0.6
879,935 + 16069 mRNA_7701 0.88 -0.1
880,200 + -0.4
880,204 + -0.2
880,206 + +0.2
880,217 - +0.2
880,367 - +1.0
880,376 + +0.5
880,463 - +0.8
880,502 + +0.1
880,507 - -0.8
880,515 - -0.5
880,641 - +0.2
880,678 + +1.5
880,822 + -0.7
880,857 + +1.4
880,948 - -2.6
881,101 - 16070 mRNA_7702 0.17 -1.0
881,119 - 16070 mRNA_7702 0.18 -1.0
881,120 + 16070 mRNA_7702 0.18 -0.9
881,223 - 16070 mRNA_7702 0.23 +0.6
881,253 - 16070 mRNA_7702 0.25 +0.8

Or see this region's nucleotide sequence