Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7824

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16191 and 16192 are separated by 484 nucleotides16192 and 16193 are separated by 148 nucleotides mRNA_7823: 16191 - K03011 RPB3, POLR2C DNA-directed RNA polymerase II subunit RPB3, at 1,150,114 to 1,151,854 16191 mRNA_7824: 16192 - K17981 MTFP1, MTP18 mitochondrial fission process protein 1, at 1,152,339 to 1,153,268 16192 mRNA_7825: 16193 - K00759 APRT, apt adenine phosphoribosyltransferase, at 1,153,417 to 1,154,602 16193

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
1,151,748 - +0.7
1,152,058 + +0.3
1,152,107 - +0.1
1,152,154 - +0.4
1,152,157 - -0.5
1,152,174 + +1.0
1,152,174 - +0.4
1,152,341 + +1.5
1,152,504 + 16192 mRNA_7824 0.18 +0.1
1,152,615 - 16192 mRNA_7824 0.30 -0.3
1,152,744 - 16192 mRNA_7824 0.44 -0.2
1,152,780 - 16192 mRNA_7824 0.47 +0.4
1,153,054 - 16192 mRNA_7824 0.77 +1.2
1,153,183 + +1.2
1,153,184 - +0.3
1,153,222 - -0.6
1,153,228 - -0.2
1,153,255 + -0.8
1,153,300 + +0.5
1,153,323 + +0.1
1,153,338 - -0.8
1,153,340 + +0.5
1,153,342 - +0.6
1,153,343 + +1.0
1,153,343 + +0.8
1,153,344 + -0.0
1,153,344 - -1.2
1,153,348 - -0.1
1,153,350 + -0.3
1,153,351 - +0.2
1,153,355 + +0.3
1,153,357 + -0.8
1,153,367 + -0.3
1,153,376 + -0.7
1,153,376 + +0.1
1,153,469 - -2.0
1,153,528 - -0.4
1,153,632 - 16193 mRNA_7825 0.18 -0.6
1,153,638 + 16193 mRNA_7825 0.19 -2.1
1,153,668 + 16193 mRNA_7825 0.21 +0.4
1,153,670 + 16193 mRNA_7825 0.21 +0.2
1,153,811 - 16193 mRNA_7825 0.33 +0.8
1,153,953 - 16193 mRNA_7825 0.45 +0.5
1,154,085 - 16193 mRNA_7825 0.56 +0.2
1,154,100 + 16193 mRNA_7825 0.58 +1.8

Or see this region's nucleotide sequence