Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7857

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16224 and 16225 are separated by 699 nucleotides mRNA_7856: 16224 - K17783 ERV1, GFER, ALR mitochondrial FAD-linked sulfhydryl oxidase, at 1,230,890 to 1,231,576 16224 mRNA_7857: 16225 - K00211 TYR1 prephenate dehydrogenase (NADP+), at 1,232,276 to 1,233,897 16225

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,231,583 + +0.6
1,231,591 - +0.5
1,231,621 - -0.0
1,231,635 + +0.5
1,231,640 - +0.4
1,231,647 + -0.3
1,231,650 + +0.9
1,231,790 - -0.5
1,231,802 + -0.4
1,231,843 + +0.8
1,231,927 + +0.2
1,231,941 - -0.2
1,231,950 + -1.8
1,232,063 - -0.7
1,232,242 + +2.2
1,233,943 - +0.5
1,234,401 - +1.0
1,234,703 + -0.3
1,234,709 + +0.7
1,234,894 + -0.4

Or see this region's nucleotide sequence