Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7884

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16252 and 16253 are separated by 402 nucleotides mRNA_7884: 16252 - KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins, at 1,296,851 to 1,297,993 16252 mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,298,396 to 1,300,627 16253

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,295,980 + -0.0
1,295,987 - -1.8
1,296,137 - +0.4
1,296,391 - +1.0
1,296,865 + +0.5
1,296,867 + +0.9
1,297,076 - 16252 mRNA_7884 0.20 -1.4
1,297,083 + 16252 mRNA_7884 0.20 -0.7
1,297,572 + 16252 mRNA_7884 0.63 -0.7
1,297,589 + 16252 mRNA_7884 0.65 +0.1
1,297,866 - 16252 mRNA_7884 0.89 -0.8
1,297,875 + 16252 mRNA_7884 0.90 -0.7
1,298,024 - -0.3
1,298,045 - -1.5
1,298,045 - +0.2
1,298,060 + -1.4
1,298,067 + +0.8
1,298,176 + -0.6
1,298,190 + +0.2
1,298,211 + +0.5
1,298,214 - +0.1
1,298,270 - +0.8
1,298,299 - -0.2
1,298,306 + +0.4
1,298,309 + +1.2
1,298,317 - +0.3
1,298,317 - +1.7
1,298,318 - -0.7
1,298,319 - +0.1
1,298,321 - +0.7
1,298,325 + -1.2
1,298,430 - +1.1
1,298,626 - 16253 mRNA_7885 0.10 +0.8
1,298,634 + 16253 mRNA_7885 0.11 -0.3
1,298,634 + 16253 mRNA_7885 0.11 +0.9
1,298,676 + 16253 mRNA_7885 0.13 -0.6
1,298,934 + 16253 mRNA_7885 0.24 +0.5

Or see this region's nucleotide sequence