Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8013

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16380 and 16381 are separated by 460 nucleotides16381 and 16382 are separated by 312 nucleotides mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212,070 to 213,325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213,638 to 214,851 16382

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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211,199 + 16380 mRNA_8012 0.82 -1.5
211,228 + 16380 mRNA_8012 0.84 +1.0
211,761 - +0.4
211,775 - +0.8
211,777 - -0.1
211,780 + -0.7
211,783 - -0.6
211,785 - -0.1
211,788 + -0.3
211,790 - +0.3
211,840 - -1.2
211,965 - +0.7
211,978 - +0.4
211,981 + +2.1
211,982 + +0.5
211,997 - +0.3
212,002 - -0.2
212,122 - +1.8
212,128 - +1.2
212,154 + +0.1
212,181 + +0.1
212,198 - 16381 mRNA_8013 0.10 -0.3
212,294 - 16381 mRNA_8013 0.18 +1.1
212,444 + 16381 mRNA_8013 0.30 +0.3
212,577 + 16381 mRNA_8013 0.40 +0.2
212,750 - 16381 mRNA_8013 0.54 +0.1
213,429 - -0.3
213,537 - +1.0
213,573 - -0.1
213,580 - -0.0
213,585 + +1.0
213,636 - +1.0
213,643 - +0.1
213,649 - +0.1
213,651 + -0.3
213,651 + -0.4
213,757 - +1.2
213,766 + 16382 mRNA_8014 0.11 +0.2
213,777 - 16382 mRNA_8014 0.11 -0.5
213,780 - 16382 mRNA_8014 0.12 +1.1
213,785 - 16382 mRNA_8014 0.12 +0.5
213,786 + 16382 mRNA_8014 0.12 -0.4
213,798 - 16382 mRNA_8014 0.13 +0.6
213,804 - 16382 mRNA_8014 0.14 -0.7
213,934 + 16382 mRNA_8014 0.24 -0.7
214,101 + 16382 mRNA_8014 0.38 -0.5
214,105 + 16382 mRNA_8014 0.38 +0.8

Or see this region's nucleotide sequence