Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8039

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16406 and 16407 are separated by 92 nucleotides16407 and 16408 are separated by 248 nucleotides mRNA_8038: 16406 - K05757 ARPC1A_B actin related protein 2/3 complex, subunit 1A/1B, at 283,766 to 285,253 16406 mRNA_8039: 16407 - HMMPfam-DASH complex subunit Dad3-PF08656, at 285,346 to 285,719 16407 mRNA_8040: 16408 - BLAST putative Structural constituent of cytoskeleton [Rhod..., at 285,968 to 287,416 16408

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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285,721 - -2.6
285,780 + +0.3
285,786 - +0.8
285,874 - -0.3
285,914 - -0.1
285,918 - +1.0
285,941 + +0.6
285,943 + -0.7
285,953 + -1.0
285,954 + -0.0
286,042 - -0.4
286,068 - +1.3
286,134 + 16408 mRNA_8040 0.11 -0.9
286,239 - 16408 mRNA_8040 0.19 +0.4
286,366 - 16408 mRNA_8040 0.27 -1.0
286,551 - 16408 mRNA_8040 0.40 +1.3

Or see this region's nucleotide sequence