Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8061

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16428 and 16429 are separated by 868 nucleotides16429 and 16430 are separated by 152 nucleotides mRNA_8060: 16428 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 325,618 to 328,246 16428 mRNA_8061: 16429 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 329,115 to 329,494 16429 mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329,647 to 331,079 16430

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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328,227 - -0.4
328,396 - +0.3
328,530 + +1.5
328,827 - -0.1
328,852 - +0.1
329,278 + 16429 mRNA_8061 0.43 +0.9
329,672 - +1.0
329,724 + -1.7
330,266 + 16430 mRNA_8062 0.43 -0.5
330,315 + 16430 mRNA_8062 0.47 +1.3

Or see this region's nucleotide sequence