Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8063

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16430 and 16431 are separated by 507 nucleotides16431 and 16432 are separated by 296 nucleotides mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329,647 to 331,079 16430 mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331,587 to 333,110 16431 mRNA_8064: 16432 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 333,407 to 335,918 16432

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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330,607 - 16430 mRNA_8062 0.67 +0.0
330,723 - 16430 mRNA_8062 0.75 -0.9
330,750 - 16430 mRNA_8062 0.77 +0.8
330,976 - +0.7
331,009 + -0.1
331,121 - -2.9
331,136 - -0.1
331,146 - -0.9
331,203 + -0.6
331,272 + -0.1
331,281 + -0.0
331,288 - +0.4
331,305 + -0.2
331,315 + +0.2
331,325 - -1.0
331,330 + +0.5
331,343 - +0.4
331,351 - +0.1
331,351 - -1.4
331,352 - -1.2
331,359 + +0.7
331,359 - +0.4
331,360 + +1.0
331,364 - -0.6
331,365 - +1.7
331,373 - +0.5
331,379 + +0.3
331,384 + -0.7
331,394 + +1.0
331,496 + -1.0
331,506 - +0.3
331,522 - +0.3
331,535 + -0.1
331,636 - +0.6
331,667 + +0.3
331,767 + 16431 mRNA_8063 0.12 +0.4
331,780 - 16431 mRNA_8063 0.13 +0.1
332,644 - 16431 mRNA_8063 0.69 +0.8
332,655 + 16431 mRNA_8063 0.70 +1.0
332,667 + 16431 mRNA_8063 0.71 +0.5
332,796 - 16431 mRNA_8063 0.79 +0.9
332,801 - 16431 mRNA_8063 0.80 -0.9
332,930 - 16431 mRNA_8063 0.88 +2.2
332,950 + 16431 mRNA_8063 0.89 +1.5
333,080 - +0.2
333,111 + +0.1
333,126 - +0.8
333,210 - -0.4
333,229 + -1.1
333,231 + +2.0
333,254 + +1.3
333,262 - -0.4
333,264 + -0.7
333,269 - +0.1
333,273 + -0.2
333,278 - +0.2
333,279 + +2.4
333,374 - +1.3
333,398 + +0.0
333,412 - -0.2
333,427 + +0.1
333,522 - +0.5
333,543 - -0.5
333,548 + +0.3
333,548 + -0.4
333,579 - +0.3
333,599 - +1.5
333,721 + 16432 mRNA_8064 0.12 +1.3
333,835 - 16432 mRNA_8064 0.17 +0.7
333,850 - 16432 mRNA_8064 0.18 +0.8
333,860 + 16432 mRNA_8064 0.18 -0.5
333,989 + 16432 mRNA_8064 0.23 +1.6
334,054 + 16432 mRNA_8064 0.26 -0.1

Or see this region's nucleotide sequence