Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8075

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16442 and 16443 are separated by 409 nucleotides mRNA_8074: 16442 - Hypothetical Protein, at 363,316 to 363,918 16442 mRNA_8075: 16443 - K13525 VCP, CDC48 transitional endoplasmic reticulum ATPase, at 364,328 to 367,178 16443

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
363,551 - 16442 mRNA_8074 0.39 +0.3
363,565 - 16442 mRNA_8074 0.41 -0.9
363,569 + 16442 mRNA_8074 0.42 +0.2
363,691 - 16442 mRNA_8074 0.62 +0.8
363,843 + 16442 mRNA_8074 0.87 +1.1
363,961 + -2.2
363,980 - +1.5
363,987 + +0.0
364,120 - +0.8
364,140 - -0.1
364,165 + -1.0
364,281 - +0.5
364,298 - +0.5
367,454 - +0.3
367,462 + +0.5
367,464 - -0.5
367,476 + +0.4
367,489 + +0.7
367,494 - +0.2
367,593 + +0.1
367,599 + +1.7
367,604 - +2.5
367,614 - +0.4
367,621 + -0.5
367,635 + +2.1
367,766 + -2.2
367,768 - +0.4
367,769 + +0.4
367,796 + +0.8
367,810 + -0.2
367,816 + -0.2
367,892 + +2.4
367,893 + +0.4
367,896 - +1.1
367,901 + +0.5
367,920 - -0.9
367,920 + +0.2
367,920 - +1.2
367,923 + -2.0
367,933 - -0.9
367,941 - -0.7
367,953 + -0.4
367,956 + -0.8
367,958 - +0.2
367,972 + -0.2
367,975 - -0.4
367,985 + -1.2
367,989 + -0.6
368,011 + -0.9
368,013 + +0.1
368,014 - +0.1
368,017 - +0.0
368,018 - -0.0
368,021 - -0.7
368,026 - -0.2
368,032 + +0.6
368,040 - -0.1
368,046 + +0.1
368,056 - +1.1
368,057 - +1.3
368,060 + +0.4
368,061 - +0.9
368,064 - +0.4
368,067 - +0.2
368,097 - +3.6
368,111 + +0.3
368,111 + +0.8
368,133 - +0.1
368,135 - +0.3
368,152 - -1.2
368,155 - +1.6
368,156 + +0.2
368,162 - -0.1
368,177 - +1.9

Or see this region's nucleotide sequence