Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8098

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16465 and 16466 are separated by 494 nucleotides16466 and 16467 are separated by 664 nucleotides mRNA_8097: 16465 - KOG0118 FOG RRM domain, at 413,277 to 414,722 16465 mRNA_8098: 16466 - Hypothetical Protein, at 415,217 to 416,223 16466 mRNA_8099: 16467 - HMMPfam-SUR7/PalI family-PF06687, at 416,888 to 417,757 16467

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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414,344 + 16465 mRNA_8097 0.74 +0.9
414,356 + 16465 mRNA_8097 0.75 +0.2
414,632 - +1.9
414,958 + +1.0
415,075 - -1.5
415,378 + 16466 mRNA_8098 0.16 -0.8
415,393 + 16466 mRNA_8098 0.17 +0.2
415,645 - 16466 mRNA_8098 0.43 +2.0
415,936 - 16466 mRNA_8098 0.71 +0.7
416,125 + -0.1
416,323 - -0.1
416,324 + -1.4
416,337 - +1.1
416,402 + -0.4
416,414 + -1.8
416,426 + -0.4
416,454 - -0.1
416,509 + +0.8
416,511 - -0.1
416,531 - +0.9
416,543 - +0.8
416,562 - -0.8
416,563 - -1.2
416,568 + +0.1
416,576 + +2.0
416,578 - -0.4
416,591 + +0.3
416,700 + -1.2
416,702 - -0.3
416,718 - +1.1
416,862 + -3.0
416,875 - +0.2
417,005 + 16467 mRNA_8099 0.13 +1.1

Or see this region's nucleotide sequence