Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8136

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16503 and 16504 are separated by 211 nucleotides16504 and 16505 are separated by 737 nucleotides mRNA_8135: 16503 - K00804 GGPS1 geranylgeranyl diphosphate synthase, type III, at 500,872 to 502,376 16503 mRNA_8136: 16504 - KOG0157 Cytochrome P450 CYP4/CYP19/CYP26 subfamilies, at 502,588 to 504,412 16504 mRNA_8137: 16505 - K00586 DPH5 diphthine methyl ester synthase, at 505,150 to 506,230 16505

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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502,307 + -0.1
502,393 - -0.3
502,783 - 16504 mRNA_8136 0.11 -1.1
503,037 - 16504 mRNA_8136 0.25 +0.4
503,176 + 16504 mRNA_8136 0.32 -0.7
503,254 - 16504 mRNA_8136 0.36 -0.5
503,452 - 16504 mRNA_8136 0.47 +0.6
503,904 + 16504 mRNA_8136 0.72 -0.9
503,909 - 16504 mRNA_8136 0.72 +0.2
504,074 + 16504 mRNA_8136 0.81 -1.1
504,375 + -0.4
504,562 + -0.1
504,776 + -0.8
504,955 + +0.4
505,077 - -0.3
505,090 + -0.2
505,221 + -0.9
505,359 + 16505 mRNA_8137 0.19 -2.4

Or see this region's nucleotide sequence